Variant DetailsVariant: dgv2476e212 | Internal ID | 20150932 | | Landmark | | | Location Information | | | Cytoband | Xq26.3 | | Allele length | | Assembly | Allele length | | hg38 | 7323 | | hg19 | 7323 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | esv3574722, esv3574719, esv3574727, esv3574723, esv3574724, esv3574721, esv3574726, esv3574725, esv3574728 | | Samples | 401799DP, 401459HF, 400316SL, 400927BD, 401020DJ, 400364SS, 400984LD, 400880TM, 400618GC, 401852SK, 400268SY, 401052BM, 400821FE, 400114GR, 401734PG, 40031BA, 400906BR, 400429YF, 401415CB, 401117NA, 400866RR, 401966SR, 400141CC, 400506GN, 400595CP, 401899MB, 401457WK, 400449PK, 401151RJ, 401698SB, 400625FT, 401096SL, 401434VN, 400855BD, 401857VG, 401426WD, 401402EN, 400191MP, 400493KH, 400620MT, 400937OR, 401190WC, 400241CP, 400131CM, 400827MM, 400606HW, 400066MA, 401687LR, 401780BB, 401214BJ, 400148MS, 401165SB, 400427SD, 401831TW, 401133JG, 400344DR, 401746WW, 402056KD, 400579HJ, 401801LA, 402029KJ, 401791FG, 400186WC, 400002HK, 400733SW, 401013GJ, 401873BK, 401448BJ, 401732HW, 400352CA, 400038CK, 400974PS, 401437MJ, 400738WM, 401540NA, 401477ST, 401432SB, 401357MH, 401804FG, 401526WB, 401278DM, 401454CD, 400375KA, 401862AN, 401586RS, 400994HJ, 401618HR, 401879HJ, 401513KC, 400265LK, 401506LK, 400724CD, 401943KA, 401942MP, 401952UH, 402054BD, 400888MS, 400387HE, 401414CR, 400639RP, 401067BD, 401981GF, 401587RC, 401795SP, 400520FM, 400354TJ, 401307VR, 401778CB, 400695PH, 401182OC, 400518MS, 401391PJ, 401595BL, 400376SJ, 401847RK, 401958MF, 401552BK, 401288LD, 401858TP, 400996MC, 400044HS, 400811SK, 400719TM, 401372RR, 400778SR, 401829FJ, 400173KP, 401882CR, 400234CA | | Known Genes | GPR112 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | dgv2476e212
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 129 | | Observed Complex | 0 | | Frequency | n/a |
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