A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2357e212



Internal ID19009565
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:107180257..107196333hg38UCSC Ensembl
chrX:106423487..106439563hg19UCSC Ensembl
CytobandXq22.3
Allele length
AssemblyAllele length
hg3816077
hg1916077
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3574284, esv3574283
Samples401519SA, 400213DB
Known GenesNUP62CL
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2357e212
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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