A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2337e212



Internal ID22785264
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:91421242..91426731hg38UCSC Ensembl
chrX:90676241..90681730hg19UCSC Ensembl
CytobandXq21.31
Allele length
AssemblyAllele length
hg385490
hg195490
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3574192, esv3574191
Samples401819BS, 401355CD, 401873BK, 401085LA, 400870KC, 401526WB, 401809FU
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2337e212
Frequency
Sample Size873
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer