Variant DetailsVariant: dgv2328e212 Internal ID | 20150784 | Landmark | | Location Information | | Cytoband | Xq21.2 | Allele length | Assembly | Allele length | hg38 | 2708 | hg19 | 2708 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3574144, esv3574141, esv3574143, esv3574146 | Samples | 400063BR, 400569WC, 401986LC, 400132HN, 40031BA, 401074CM, 400834SS, 401603HH, 400934LA, 401536BD, 401695BT, 401006ES, 400588BE, 400600DP, 400231LP, 401550SP, 400385LJ, 401620BA, 400413FJ, 401397WN, 400702PA, 400043HC, 401864CV, 4000657TM, 401892MJ, 400248JO, 400846MC, 401011PJ, 400571WV, 400378HL, 400444MM, 400168HC, 401608GE, 402060PD, 400863SS, 400930MK, 401215MJ, 400778SR, 401817MC, 400108BJ, 401284NA, 400150SS, 401576WC, 400138LA, 401068SD | Known Genes | CHM | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv2328e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 45 | Observed Complex | 0 | Frequency | n/a |
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