A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv227e212



Internal ID20148683
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:46400352..46486467hg38UCSC Ensembl
chr10:47062985..47149411hg19UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg3886116
hg1986427
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3578847, esv3578842, esv3578840, esv3578807, esv3578845, esv3578841, esv3578850, esv3578851, esv3578848, esv3578843, esv3578844
Samples400845ML, 401401BA, 400631SJ, 40031BA, 402016HZ, 401930GD, 401079HJ, 401874DJ, 401677MM, 400177SJ, 401331LJ, 400083TG
Known GenesHNRNPA1P33, LINC00842, LOC100996758, NPY4R
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv227e212
Frequency
Sample Size873
Observed Gain0
Observed Loss12
Observed Complex0
Frequencyn/a


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