A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2276e212



Internal ID22785203
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:37825651..37827750hg38UCSC Ensembl
chrX:37684904..37687003hg19UCSC Ensembl
CytobandXp11.4
Allele length
AssemblyAllele length
hg382100
hg192100
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3573863, esv3573867, esv3573866
Samples400316SL, 400655WB, 401845MJ, 400425SL, 401975VD, 401281BP, 400606HW, 401746WW, 400113LD, 401448BJ, 400983PV, 401397WN, 400093BL, 401879HJ, 401730MS, 401942MP, 401606CG, 400639RP, 401889FR, 401496SL, 401016IT, 400586RD, 401215MJ, 400108BJ, 401453OL, 400091BS
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2276e212
Frequency
Sample Size873
Observed Gain0
Observed Loss26
Observed Complex0
Frequencyn/a


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