A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2269e212



Internal ID22785196
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:32863147..32865679hg38UCSC Ensembl
chrX:32881264..32883796hg19UCSC Ensembl
CytobandXp21.1
Allele length
AssemblyAllele length
hg382533
hg192533
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3573826, esv3573821, esv3573825
Samples400911GA, 400424LN, 400063BR, 400569WC, 400105BB, 401146US, 400917CG, 400906BR, 400622SJ, 400429YF, 402067KS, 401518VK, 401079HJ, 400949AM, 401927SK, 401151RJ, 400629BM, 401434VN, 400937OR, 401258PC, 401006ES, 400460DM, 400871CM, 400348DK, 401198TI, 400478WE, 400843FL, 401726LW, 400974PS, 401834CB, 400838AM, 400240HJ, 401652HL, 401606CG, 400171BJ, 400547BS, 401017SC, 400371GA, 401700BN, 400136DM, 401391PJ, 400722OM, 401166WJ, 401817MC, 401354KM, 400835FD, 401177SL
Known GenesDMD
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2269e212
Frequency
Sample Size873
Observed Gain0
Observed Loss47
Observed Complex0
Frequencyn/a


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