A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2232e212



Internal ID20150688
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:19787269..19805671hg38UCSC Ensembl
chrX:19805387..19823789hg19UCSC Ensembl
CytobandXp22.12
Allele length
AssemblyAllele length
hg3818403
hg1918403
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3573632, esv3573633
Samples400478WE, 400458LS, 400599CP, 401326LI, 402063WM, 400374LB, 400982BS, 400601WC
Known GenesSH3KBP1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2232e212
Frequency
Sample Size873
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


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