A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2201e212



Internal ID20150657
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:6531796..6702266hg38UCSC Ensembl
chrX:6449837..6620307hg19UCSC Ensembl
CytobandXp22.31
Allele length
AssemblyAllele length
hg38170471
hg19170471
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3576729, esv3576731
Samples401698SB, 400508RD
Known GenesVCX3A
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2201e212
Frequency
Sample Size873
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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