A curated catalogue of human genomic structural variation

Variant Details

Variant: dgv219e212

Internal ID20148675
Location Information
TypeCoordinatesAssemblyOther Links
chr10:46400352..46583083hg38UCSC Ensembl
chr10:46966534..47149411hg19UCSC Ensembl
Allele length
AssemblyAllele length
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3576583, esv3576894
Samples401580CA, 401333MM, 401434VN, 400649PS, 400821FE, 402024BB, 401822TL, 400282RA, 401935TM, 400671PP, 401852SK
Known GenesGPRIN2, HNRNPA1P33, LINC00842, LOC100996758, NPY4R, SYT15
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Pubmed ID25503493
Accession Number(s)dgv219e212
Sample Size873
Observed Gain11
Observed Loss0
Observed Complex0

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