Variant DetailsVariant: dgv2155e212 Internal ID | 20150611 | Landmark | | Location Information | | Cytoband | 9q21.11 | Allele length | Assembly | Allele length | hg38 | 5896 | hg19 | 5896 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3573239, esv3573244, esv3573243 | Samples | 400424LN, 401384BP, 400191MP, 400773GS, 400320RN, 401591BE, 401251WN, 401230NL, 401804FG, 400171BJ, 400014SL, 400458LS, 400722OM, 400312CR | Known Genes | TJP2 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv2155e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 14 | Observed Complex | 0 | Frequency | n/a |
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