A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2154e212



Internal ID20150610
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:69125278..69131137hg38UCSC Ensembl
chr9:71740194..71746053hg19UCSC Ensembl
Cytoband9q21.11
Allele length
AssemblyAllele length
hg385860
hg195860
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3576654, esv3576655
Samples401146US, 401266HM, 400105BB, 401491BB, 400702PA, 401942MP, 401482CB, 401607LL, 401359HF, 401105WS, 400524NJ, 400705KK, 401030GI, 400271SR, 401490TL, 400996MC, 401196CR, 401763SG, 402016HZ, 400615RI, 400007RG, 400302HW, 400661AD, 400564SN, 400523GB, 401330RR, 401096SL, 401477ST, 400307HW, 401603HH, 401894PD, 400347VJ, 401780BB, 401427CB, 401143LK, 401873BK, 401863BD, 400429YF, 401786WD, 401764JJ, 400450FG, 400876OG, 401432SB, 400739SS, 400341GL, 402042BJ, 400325BE, 401066MM, 401994BD, 401365DJ, 401444LD, 400542EG, 400627CC, 401372RR, 400601WC, 400344DR, 401135CS, 401288LD, 401437MJ, 400626FC, 400554WB, 400084DM, 400483DP, 401234MB, 401012TP, 400425SL, 401884WJ, 401119DK, 400138LA, 401025SM, 401402EN, 400801HS, 401813DN
Known GenesTJP2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2154e212
Frequency
Sample Size873
Observed Gain73
Observed Loss0
Observed Complex0
Frequencyn/a


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