A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv214e212



Internal ID22783141
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:46287822..47692945hg19UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg191405124
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3576794, esv3576682, esv3576750, esv3576806
Samples401606CG, 400888MS, 401616WP, 400328LM, 400833BB
Known GenesAGAP4, AGAP9, ANTXRL, ANTXRLP1, ANXA8, BMS1P1, BMS1P2, BMS1P5, BMS1P6, FAM21C, FAM25C, FAM25G, FAM35BP, FAM35DP, GLUD1P7, GPRIN2, HNRNPA1P33, LINC00842, LOC100996758, NPY4R, PTPN20A, PTPN20B, SYT15
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv214e212
Frequency
Sample Size873
Observed Gain5
Observed Loss0
Observed Complex0
Frequencyn/a


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