Variant DetailsVariant: dgv2059e212 Internal ID | 20150515 | Landmark | | Location Information | | Cytoband | 8p22 | Allele length | Assembly | Allele length | hg38 | 14786 | hg19 | 14786 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3572625, esv3572618, esv3572617, esv3572619, esv3572616 | Samples | 400570RW, 400594VJ, 400730SH, 401603HH, 401136LB, 400368SD, 401448BJ, 400702PA, 401804FG, 401475MK, 401493HC, 400242TP, 401981GF, 400371GA, 401039PA, 401056TJ, 400173KP, 401153HS, 401207DA | Known Genes | PSD3 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv2059e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 19 | Observed Complex | 0 | Frequency | n/a |
|
|