A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2007e212



Internal ID22784934
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:155784234..155786349hg38UCSC Ensembl
chr7:155576928..155579043hg19UCSC Ensembl
Cytoband7q36.3
Allele length
AssemblyAllele length
hg382116
hg192116
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3572348, esv3572350, esv3572347
Samples400739SS, 400325BE, 401093VL, 400340CD, 400245SJ, 400333CC, 400383HL, 401785MJ, 401540NA, 401477ST, 401736BF, 401717LP, 401879HJ, 400547BS, 401981GF, 400422PN, 400205SP, 401166WJ, 400315DA
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2007e212
Frequency
Sample Size873
Observed Gain0
Observed Loss19
Observed Complex0
Frequencyn/a


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