A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1e49



Internal ID20126472
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:5684858..6183224hg38UCSC Ensembl
chr10:5726821..6225187hg19UCSC Ensembl
chr10:5766827..6265193hg18UCSC Ensembl
Cytoband10p15.1
Allele length
AssemblyAllele length
hg38498367
hg19498367
hg18498367
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv34147, esv34061
Samples
Known GenesANKRD16, FAM208B, FBXO18, GDI2, IL15RA, IL2RA, MIR3155A, MIR3155B, PFKFB3, RBM17
MethodSNP array
AnalysisWe further explored the discovery of segmental deletions in the Kosraean population data where IBD is more prevalent, and we observe a larger number of gaps.We used a binomial score to rank potential deletions in homozygous gaps based on the number of mismatching SNPs and the rate of mismatch in the flanking shared segments, measured across all shared segments with the suspected gap. To prioritize the segmental gaps that were most likely to be representative of a deletion, we developed a scoring function based on the number of mismatching SNPs and levels of homozygosity in the gap.
PlatformNot reported
Comments
ReferenceGusev_et_al_2009
Pubmed ID18971310
Accession Number(s)dgv1e49
Frequency
Sample Size270
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer