A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1998e212



Internal ID22784925
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:154594762..154611149hg38UCSC Ensembl
chr7:154386472..154402859hg19UCSC Ensembl
Cytoband7q36.2
Allele length
AssemblyAllele length
hg3816388
hg1916388
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3572323, esv3572326
Samples400701MM, 400882DD, 401038LN, 401825TH
Known GenesDPP6
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1998e212
Frequency
Sample Size873
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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