A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1985e212



Internal ID22784912
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:147314296..147320311hg38UCSC Ensembl
chr7:147011388..147017403hg19UCSC Ensembl
Cytoband7q35
Allele length
AssemblyAllele length
hg386016
hg196016
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3572258, esv3572261, esv3572256, esv3572257, esv3572259, esv3572260, esv3572255
Samples400802DP, 401841OB, 401195PN, 401733CG, 401093VL, 400199SA, 400934LA, 400425SL, 400620MT, 400503HD, 400127MD, 401538NS, 401252AE, 400385LJ, 400206SC, 400353ML, 401532LJ, 401393JW, 401347DH, 401714BM, 400768MN, 401210PB, 401864CV, 400705KK, 400248JO, 401847RK, 402051AF, 400069CN, 400930MK, 401143LK, 401817MC, 400130HA
Known GenesCNTNAP2, MIR548I4
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1985e212
Frequency
Sample Size873
Observed Gain0
Observed Loss32
Observed Complex0
Frequencyn/a


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