A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1915n54



Internal ID20135339
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:55600413..55685447hg38UCSC Ensembl
chr11:55367889..55452923hg19UCSC Ensembl
chr11:55124465..55209499hg18UCSC Ensembl
Cytoband11q11
Allele length
AssemblyAllele length
hg3885035
hg1985035
hg1885035
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv554950, nsv554894, nsv554833, nsv554897, nsv554900, nsv554834, nsv554921, nsv554832, nsv554943, nsv554895, nsv554922
SamplesHGDP00722, HGDP01062, HGDP01208, HGDP00964, HGDP01247, 1780862402_A, HGDP01385, HGDP01235, HGDP00770, HGDP00543, HGDP00445, HGDP00995, HGDP00433, HGDP00479, HGDP00851, NINDS_58, HGDP01250, HGDP00724, NINDS_119, HGDP01288, 1780854446_A, 1780854445_A, 1798860072_A, HGDP00717, 1780854439_A, HGDP01352, 1782681109_A, HGDP00013, HGDP00120, 1780862294_A, HGDP01384, HGDP00785, HGDP01059, HGDP00695, 1780862381_A, HGDP00624, HGDP00153, 1780862452_A, HGDP01010, NINDS_74, HGDP01069, 1780862078_A, HGDP01101, HGDP00850, 1780854016_A, 1780862075_A, HGDP01004, HGDP01164, HGDP00919, 1780854176_A, HGDP00551, HGDP00141, 1780854558_A, HGDP01287, HGDP00764, HGDP00756, HGDP00090, 1798860592_A, HGDP00150, NINDS_87, HGDP00298, 1787431197_A, HGDP00183, 1782681110_A, NINDS_4, 1780862392_A, HGDP00952, HGDP01279, 1780862596_A, 1780862443_A, HGDP01259, HGDP01071, HGDP00633, HGDP00112, HGDP00522, 1798860306_A, HGDP01096, NINDS_29, HGDP01328, HGDP00588, HGDP00237, 1798860049_A, NINDS_3, 1780862416_A, 1780854341_A, 1780862408_A, HGDP00356, HGDP01371, HGDP00779, HGDP00857, NINDS_89, HGDP00676, HGDP00121, NINDS_102, HGDP01362, HGDP01321, NINDS_160, HGDP00852, HGDP00865, HGDP00623, 1780862301_A, NINDS_221, HGDP00879, HGDP00727, HGDP01073, HGDP00309, HGDP01348, HGDP01253, HGDP00874, 1782681317_A, HGDP01329, 1780854325_A, NINDS_244, HGDP00886, HGDP00670, HGDP00975, HGDP00793, HGDP00864, HGDP01039, HGDP00620, HGDP00086, HGDP00818, NINDS_71, 1780862161_A, HGDP01228, HGDP01100, 1780862584_A, 1780862334_A, HGDP01358, HGDP01076, HGDP01374, 1780854382_A, HGDP00743, HGDP00600, HGDP00163, HGDP01180, HGDP01041, 1780854496_A, HGDP00319, NINDS_80, HGDP00663, 1780854574_A, 1780862252_A, HGDP00610, 1780862100_A, HGDP00017, NINDS_196, HGDP00876, HGDP01147, HGDP00716, NINDS_149, HGDP00863, HGDP00049, HGDP00702, 1798860570_A, HGDP00732, HGDP00341, 1780862001_A, NINDS_231, HGDP00685, 1780854463_A, HGDP01194, 1798860552_A, HGDP00997, HGDP00958, HGDP00846, 1782681219_A, HGDP01210, NINDS_272, HGDP00315, 1780854158_A, HGDP01231, HGDP00195, HGDP00814, HGDP00154, HGDP00725, HGDP00554, 1780862007_A, HGDP01267, HGDP00772, NINDS_103, HGDP01204, 1782681294_A, NINDS_211, HGDP00579, HGDP01269, HGDP00563, HGDP00088, 1780862540_A, HGDP01177, 1780854219_A, HGDP01191, HGDP00105, HGDP00288, HGDP00802, HGDP00140, HGDP01312, HGDP00679, HGDP00548, HGDP00956, 1780862592_A, HGDP00699, 1780862080_A, 1780854129_A, 1780862393_A, HGDP01363, HGDP01274, HGDP00286, HGDP00553, HGDP01263, HGDP01154, HGDP01200, HGDP01054, HGDP01063, NINDS_109, HGDP00891, 1780862388_A, 1780854334_A, HGDP01271, HGDP00862, HGDP00834, 1780862180_A, 1798860047_A, NINDS_81, HGDP01008, 1780862020_A, HGDP00658, 1780862565_A, HGDP00840, HGDP01266, HGDP00889, HGDP00124, HGDP00041, 1780854444_A, HGDP00971, HGDP00655, HGDP00830, HGDP00423, HGDP01338, HGDP00823, 1780862461_A, HGDP00654, HGDP01012, HGDP00882, HGDP00567, HGDP00185, 1780854198_A, HGDP00761, NINDS_193, HGDP01273, 1782681263_A, 1780862160_A, NINDS_240, NINDS_100, HGDP01307, NINDS_230, NINDS_171, HGDP00019, HGDP00741, HGDP00789, HGDP00054, 1780862125_A, 1780862081_A, HGDP00662, HGDP00978, HGDP00351, HGDP00930, 1780862466_A, HGDP00613, HGDP00625, HGDP01370, 1780854216_A, NINDS_114, HGDP00769, HGDP00866, HGDP01319, HGDP01244, HGDP01400, HGDP01245, HGDP00574, HGDP00718, 1780862300_A, HGDP00921, HGDP00656, HGDP01018, HGDP00847, HGDP00710, HGDP01376, HGDP00781, HGDP00102, HGDP01179, HGDP01027, HGDP00917, HGDP01157, HGDP01226, HGDP00615, HGDP00572, HGDP00927, 1780862403_A, 1780854017_A, NINDS_134, HGDP00359, HGDP01277, HGDP00515, HGDP00890, HGDP00855, HGDP00187, NINDS_207, 1782681024_A, HGDP00161, HGDP00333, HGDP00011, HGDP00745, HGDP00594, NINDS_101, HGDP01174, 1780862554_A, 1780854484_A, NINDS_259, HGDP00792, 1780862304_A, 1780854436_A, HGDP01195, HGDP00647, HGDP01209, 1780862339_A, HGDP00835, 1780862599_A, NINDS_163, HGDP01402, HGDP00491, HGDP00277, 1780862274_A, HGDP01056, 1780854130_A, HGDP01347, HGDP00621, HGDP00813, HGDP01350, HGDP00629, HGDP01377, HGDP00568, HGDP01281, 1780862563_A, HGDP01217, 1780854318_A, NINDS_246, HGDP00837, NINDS_155, HGDP00191, 1780854592_A, HGDP00856, HGDP00821, HGDP00279, HGDP00428, HGDP00806, HGDP00060, HGDP00372, HGDP00878, HGDP00129, 1780862275_A, 1780854567_A, NINDS_22, 1798860166_A, HGDP01040, NINDS_253, HGDP00080, HGDP01205, 1780862559_A, 1780854462_A, 1780862424_A, NINDS_124, HGDP01298, 1780862229_A, HGDP00707, HGDP00828, 1798860336_A, HGDP01203, HGDP00778, HGDP01320, HGDP00609, HGDP00556, NINDS_129, 1780854210_A, HGDP00084, HGDP00035, NINDS_206, HGDP00747, HGDP00558, HGDP01261, 1780862551_A, HGDP01306, HGDP00146, HGDP00928, 1782681116_A, HGDP01099, HGDP01016, NINDS_65, HGDP01097, 1780862109_A, HGDP00869, HGDP00807, HGDP00884, HGDP00642, NINDS_97, 1780862448_A, HGDP00033, HGDP00052, HGDP01050, HGDP00539, HGDP00976, HGDP00748, HGDP00037, 1780862084_A, 1780854392_A, HGDP01078, 1780862066_A, HGDP00790, HGDP00131, HGDP01057, 1782681099_A, HGDP01042, HGDP00844, NINDS_203, HGDP00877, HGDP00110, HGDP00736, 1782681495_A, NINDS_76, HGDP00819, HGDP00861, 1780862094_A, NINDS_179, 1780862435_A, HGDP00130, HGDP00709, HGDP00916, 1780854485_A, HGDP01294, HGDP00618, HGDP01221, HGDP00972, HGDP00664, HGDP01317, NINDS_17, HGDP00544, 1780846005_A, HGDP00616, HGDP00135, HGDP00833, HGDP00262, HGDP00730, HGDP01212, HGDP00860, HGDP00849, 1780862530_A, HGDP01234, HGDP00627, HGDP00290, HGDP01308, HGDP00529, HGDP00113, HGDP00023, 1780854336_A, 1780862162_A, HGDP00935, HGDP00999, HGDP01258, HGDP01152, HGDP00758, NINDS_39, 1782681287_A, HGDP01184, 1780854257_A, HGDP00258, HGDP00604, HGDP00598, 1780862574_A, 1780862299_A, HGDP01001, HGDP00998, HGDP00694, NINDS_115, HGDP00755, HGDP00631, 1780862539_A, HGDP01309, 1782681080_A, HGDP00541, 1780854294_A, HGDP01053, HGDP00696, HGDP01049, HGDP00244, HGDP00136, HGDP00787, HGDP00766, HGDP01048, HGDP00066, NINDS_105, 1780862576_A, HGDP00959, HGDP00760, NINDS_192, HGDP01037, 1780862401_A, HGDP00526, NINDS_254, HGDP00570, HGDP00845, HGDP01388, NINDS_45, HGDP00898, HGDP00872, 1780862404_A, HGDP00749, HGDP01046, HGDP01067, 1780862419_A, HGDP01103, 1780862156_A, NINDS_9, NINDS_241, HGDP01268, HGDP01387, HGDP00848, HGDP00843, HGDP00015, HGDP00980, HGDP00720, NINDS_197, HGDP01072, HGDP01213, HGDP00591, 1780854302_A, HGDP00672, HGDP00762, HGDP00683, 1780862101_A, HGDP00839, HGDP00438, HGDP00197, HGDP01043, HGDP00938, HGDP00973, 1780862041_A, HGDP00697, HGDP00841, HGDP01198, 1780862043_A, HGDP00388, HGDP00969, HGDP00064, 1780862597_A, HGDP01173, HGDP00746, HGDP00058, HGDP00900, HGDP00160, HGDP01058, 1798860251_A, HGDP00622, 1782681102_A, HGDP00490, HGDP00158, NINDS_99, HGDP00171, HGDP01351, HGDP01077, HGDP00780, HGDP01366, HGDP01327, 1780862021_A, 1780854568_A, HGDP00583, 1780854511_A, NINDS_222, HGDP00239, HGDP01275, HGDP00825, HGDP01305, HGDP00336, HGDP00838, HGDP00402, HGDP01045, HGDP01011, HGDP00711, 1780854159_A, HGDP01044, HGDP00859, HGDP00155, HGDP00773, 1780862437_A, HGDP01000, HGDP00961, 1780862379_A, 1780862432_A, HGDP00914
Known GenesOR4C11, OR4C6, OR4P4, OR4S2
MethodSNP array
AnalysisIllumina SNP array copy number analysis
PlatformNot reported
Comments
ReferenceCooper_et_al_2011
Pubmed ID21841781
Accession Number(s)dgv1915n54
Frequency
Sample Size17421
Observed Gain104
Observed Loss1375
Observed Complex0
Frequencyn/a


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