A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1915n54



Internal ID20135339
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:55600413..55685447hg38UCSC Ensembl
chr11:55367889..55452923hg19UCSC Ensembl
chr11:55124465..55209499hg18UCSC Ensembl
Cytoband11q11
Allele length
AssemblyAllele length
hg3885035
hg1985035
hg1885035
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv554900, nsv554834, nsv554832, nsv554922, nsv554943, nsv554895, nsv554894, nsv554950, nsv554897, nsv554833, nsv554921
SamplesHGDP00802, NINDS_230, HGDP00336, HGDP01041, HGDP01000, HGDP00995, HGDP01037, HGDP00102, NINDS_203, HGDP00685, HGDP00356, HGDP00999, HGDP01350, 1780862180_A, HGDP00121, HGDP00588, HGDP00438, HGDP00749, HGDP01179, HGDP01388, HGDP00859, HGDP00154, HGDP00839, HGDP01057, HGDP00423, HGDP00756, HGDP01221, HGDP01234, HGDP01288, HGDP01263, HGDP01259, 1780862334_A, NINDS_74, HGDP00262, HGDP00879, NINDS_105, NINDS_196, 1780854158_A, 1780862401_A, HGDP00064, HGDP00778, HGDP00035, NINDS_9, 1780854325_A, HGDP00153, 1780854016_A, HGDP01212, 1780854462_A, NINDS_58, NINDS_89, HGDP00124, 1780862100_A, 1780862466_A, HGDP00952, 1780862294_A, HGDP00191, HGDP00857, NINDS_206, 1780862402_A, HGDP00787, NINDS_155, HGDP00785, HGDP00818, NINDS_160, HGDP00876, HGDP00158, HGDP00490, HGDP00672, HGDP01050, HGDP01385, HGDP00351, HGDP00526, HGDP01056, NINDS_97, NINDS_76, NINDS_124, HGDP00013, HGDP00019, HGDP01226, HGDP01312, 1780854216_A, 1780862275_A, NINDS_101, HGDP01261, 1780862252_A, HGDP00919, HGDP01062, NINDS_221, HGDP00185, HGDP00898, HGDP01258, 1780854257_A, HGDP00846, 1780854341_A, 1780862530_A, HGDP00290, HGDP01203, HGDP00761, HGDP01184, NINDS_102, HGDP00037, 1780862381_A, 1780862596_A, HGDP00696, HGDP01097, 1782681102_A, HGDP00054, HGDP00620, HGDP01174, HGDP00825, HGDP00663, HGDP00676, 1780854129_A, HGDP00131, HGDP00928, HGDP00819, HGDP00834, HGDP00838, 1780846005_A, HGDP00917, 1780854318_A, 1780862540_A, HGDP00850, 1780854219_A, HGDP00594, HGDP00622, HGDP00972, HGDP01374, NINDS_246, NINDS_109, 1780862001_A, HGDP00975, 1780854592_A, HGDP00889, HGDP00976, HGDP01271, 1780854496_A, HGDP00851, 1780862379_A, NINDS_241, HGDP00837, 1780862437_A, 1780862592_A, HGDP00627, HGDP01279, HGDP00861, HGDP00830, HGDP00997, HGDP00372, HGDP00741, HGDP01191, HGDP00718, HGDP00598, HGDP01164, NINDS_119, HGDP00959, HGDP01371, HGDP01269, HGDP00864, 1780854198_A, HGDP00877, HGDP00583, HGDP00772, HGDP01096, HGDP01213, HGDP01362, 1780854446_A, 1780862109_A, HGDP00697, NINDS_211, NINDS_272, HGDP01209, HGDP00717, HGDP00656, HGDP00710, HGDP00554, 1798860166_A, HGDP01370, NINDS_39, HGDP00445, HGDP00616, 1780862559_A, HGDP01377, HGDP00543, HGDP00522, HGDP01195, 1780854574_A, HGDP01049, HGDP00244, HGDP01147, HGDP00558, HGDP00958, HGDP01198, HGDP00625, 1787431197_A, HGDP00084, HGDP00841, NINDS_163, NINDS_231, 1780862388_A, HGDP00847, HGDP00309, HGDP01305, HGDP01307, HGDP00956, 1780862435_A, HGDP00935, HGDP01063, 1780862403_A, HGDP00171, HGDP00662, HGDP00762, NINDS_115, 1780854130_A, HGDP01073, HGDP00604, HGDP01177, HGDP00187, HGDP01384, HGDP00711, 1798860570_A, HGDP00727, 1780862443_A, HGDP00572, HGDP01217, 1780854511_A, 1780862075_A, HGDP00613, HGDP01072, 1780854445_A, HGDP00112, HGDP01274, HGDP00610, HGDP00856, HGDP01327, NINDS_17, HGDP00058, HGDP00286, 1780862162_A, 1782681294_A, HGDP00609, HGDP00790, HGDP00725, HGDP00113, HGDP00539, HGDP00541, 1780862021_A, NINDS_259, NINDS_81, HGDP00716, HGDP00060, NINDS_129, NINDS_179, 1780854558_A, NINDS_100, 1780862080_A, HGDP01154, 1782681024_A, HGDP00849, HGDP00183, HGDP00845, HGDP01347, NINDS_71, HGDP00806, HGDP00884, 1780862094_A, HGDP00548, HGDP00773, HGDP00655, HGDP00872, HGDP00654, HGDP00722, 1782681317_A, HGDP00695, HGDP01004, HGDP00833, HGDP00792, 1780854176_A, HGDP00574, HGDP00136, HGDP00683, HGDP00766, HGDP01366, 1780862161_A, HGDP00288, HGDP00563, HGDP00745, HGDP00891, HGDP00927, HGDP00961, HGDP01321, HGDP01348, 1780854436_A, HGDP00150, 1780862408_A, HGDP01100, HGDP00110, 1780854334_A, HGDP00844, 1780862584_A, HGDP00631, HGDP01376, NINDS_4, HGDP00840, HGDP01039, 1780854568_A, HGDP00863, HGDP00886, HGDP01173, HGDP01308, HGDP01046, HGDP01077, 1780862551_A, HGDP00855, HGDP00914, HGDP01101, 1780854210_A, HGDP00736, NINDS_87, 1782681263_A, HGDP00835, HGDP00298, HGDP00402, HGDP00779, HGDP00807, HGDP01078, HGDP01363, NINDS_114, HGDP01069, HGDP01298, HGDP00848, HGDP00011, HGDP00780, 1798860049_A, HGDP00088, HGDP00789, HGDP00702, HGDP01277, HGDP00080, HGDP00732, HGDP00633, HGDP00878, HGDP01067, 1780862299_A, 1780862599_A, 1798860592_A, 1780862160_A, HGDP00624, HGDP01329, 1780854302_A, HGDP01076, HGDP01235, HGDP00066, HGDP00359, HGDP01273, HGDP01281, HGDP01358, HGDP00615, NINDS_3, HGDP00155, HGDP01043, HGDP01294, HGDP00023, 1780854294_A, HGDP00591, HGDP01205, 1780862574_A, HGDP00969, HGDP01387, HGDP00129, HGDP00146, HGDP00781, HGDP00860, HGDP00998, HGDP01267, 1780862078_A, 1780862043_A, HGDP00160, HGDP01044, HGDP01058, NINDS_22, HGDP00866, 1798860072_A, HGDP00828, HGDP01253, HGDP00852, HGDP00568, 1780862101_A, HGDP00315, HGDP01210, HGDP01328, HGDP01053, HGDP00341, 1780862274_A, HGDP00755, HGDP01042, HGDP00130, HGDP01048, HGDP01352, HGDP00978, HGDP01001, NINDS_222, 1780862554_A, 1780854017_A, 1780862020_A, HGDP01152, HGDP01247, 1780854485_A, HGDP01027, HGDP00971, NINDS_99, HGDP01016, 1780862392_A, HGDP00163, HGDP00629, 1780862300_A, 1780862424_A, HGDP01266, HGDP00237, HGDP00141, HGDP01011, 1780862576_A, HGDP00647, HGDP00090, 1780862125_A, HGDP00874, HGDP01059, HGDP01010, HGDP00135, HGDP00921, 1782681099_A, HGDP00491, HGDP00764, HGDP00843, HGDP00964, HGDP00086, HGDP00823, HGDP00642, HGDP00041, HGDP00197, HGDP00747, 1780854444_A, HGDP00052, HGDP00938, HGDP01040, HGDP00277, 1780854463_A, HGDP00319, HGDP01400, 1780854439_A, 1780862404_A, 1782681080_A, HGDP00699, HGDP00015, HGDP00821, HGDP01275, HGDP00664, HGDP00556, 1780854382_A, 1780862432_A, HGDP00333, 1780854567_A, 1780862066_A, 1780862563_A, HGDP00570, HGDP01194, HGDP00433, HGDP00980, 1782681109_A, HGDP01317, 1782681287_A, HGDP00529, 1798860251_A, HGDP01103, HGDP01018, HGDP01250, NINDS_45, HGDP00869, HGDP01338, 1780854159_A, HGDP00258, HGDP00770, HGDP01306, NINDS_171, HGDP00658, HGDP01268, NINDS_29, HGDP00890, NINDS_207, 1782681110_A, HGDP00813, HGDP00882, HGDP01045, 1780862339_A, HGDP00793, 1780862301_A, 1780854336_A, HGDP00105, HGDP00388, HGDP00760, HGDP00900, 1780862084_A, 1782681495_A, HGDP01204, 1780862539_A, HGDP00724, HGDP00743, HGDP01309, HGDP01071, 1780862156_A, HGDP00479, 1780854484_A, HGDP00973, HGDP01054, HGDP01319, HGDP00707, HGDP00720, NINDS_197, NINDS_254, HGDP00033, HGDP00544, HGDP00670, HGDP00679, HGDP00694, HGDP00758, HGDP00140, HGDP00618, HGDP01200, 1798860047_A, HGDP00746, NINDS_240, 1780862461_A, HGDP00730, 1780862416_A, 1780862565_A, HGDP01008, HGDP01287, NINDS_103, HGDP00017, HGDP00567, HGDP01228, NINDS_192, 1780862597_A, HGDP01157, HGDP00579, 1780862419_A, 1782681116_A, 1782681219_A, 1780862452_A, HGDP00195, HGDP00748, 1780862229_A, HGDP00551, 1780862041_A, HGDP00120, 1798860306_A, HGDP00621, NINDS_65, HGDP01231, HGDP01320, HGDP00515, 1780862007_A, HGDP00865, HGDP00709, HGDP00049, HGDP00553, HGDP00862, HGDP00769, 1798860552_A, NINDS_134, HGDP01012, NINDS_149, HGDP01180, NINDS_193, 1780862304_A, NINDS_244, HGDP00428, 1780862393_A, HGDP00239, HGDP01245, HGDP01099, HGDP00623, HGDP00814, 1780862081_A, NINDS_80, HGDP00600, 1798860336_A, NINDS_253, HGDP00279, HGDP00930, HGDP01244, HGDP01351, HGDP00161, 1780862448_A, HGDP01208, HGDP00916, 1780854392_A, HGDP01402
Known GenesOR4C11, OR4C6, OR4P4, OR4S2
MethodSNP array
AnalysisIllumina SNP array copy number analysis
PlatformNot reported
Comments
ReferenceCooper_et_al_2011
Pubmed ID21841781
Accession Number(s)dgv1915n54
Frequency
Sample Size17421
Observed Gain104
Observed Loss1375
Observed Complex0
Frequencyn/a


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