A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1884e212



Internal ID22784811
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:34647553..34681061hg38UCSC Ensembl
chr7:34687165..34720673hg19UCSC Ensembl
Cytoband7p14.3
Allele length
AssemblyAllele length
hg3833509
hg1933509
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3571738, esv3571741
Samples400620MT, 400600DP, 401943KA
Known GenesNPSR1, NPSR1-AS1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1884e212
Frequency
Sample Size873
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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