Variant DetailsVariant: dgv1843e212 Internal ID | 20150299 | Landmark | | Location Information | | Cytoband | 6q25.1 | Allele length | Assembly | Allele length | hg38 | 28714 | hg19 | 28714 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3571475, esv3571479, esv3571482, esv3571478, esv3571481, esv3571480, esv3571474 | Samples | 401806DL, 400377WJ, 400468OB, 401460LW, 400622SJ, 400221VM, 401841OB, 400655WB, 401442WR, 400509CJ, 400203NA, 400688FL, 400307HW, 401831TW, 401133JG, 400579HJ, 401609MB, 400107MJ, 400109LJ, 400442FE, 401732HW, 400791GC, 400040CN, 400783MJ, 401730MS, 401419SW, 401943KA, 400844GP, 401619BT, 400361HC, 400705KK, 400371GA, 400598DA, 400354TJ, 401307VR, 401778CB, 401259LS, 400201PK, 400837HN, 400471YS, 402009WP, 400410CD, 400859SC, 401817MC, 401458RT, 400291VJ, 400152MR | Known Genes | ESR1 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv1843e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 47 | Observed Complex | 0 | Frequency | n/a |
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