A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1805e212



Internal ID22784732
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:78010028..78039911hg38UCSC Ensembl
chr6:78719745..78749628hg19UCSC Ensembl
Cytoband6q14.1
Allele length
AssemblyAllele length
hg3829884
hg1929884
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3571223, esv3571225, esv3571227
Samples400316SL, 401636WR, 401806DL, 400984LD, 400987FB, 400619MP, 400594VJ, 400094RS, 400876OG, 401235IA, 400294HD, 400906BR, 400683EC, 401079HJ, 400995MS, 400068PW, 401719RL, 400655WB, 401093VL, 401820SD, 401434VN, 401857VG, 401426WD, 400948EV, 400425SL, 401582GG, 401500OM, 400155CW, 401064FR, 400298ME, 400669LD, 401808PS, 401695BT, 400773GS, 400148MS, 400022WA, 401538NS, 401766MR, 400817MB, 401596PJ, 402056KD, 400582WS, 401620BA, 401192MJ, 400843FL, 400763BT, 400352CA, 401725MR, 400007RG, 401331LJ, 400416KA, 400533BB, 400791GC, 401477ST, 401432SB, 401357MH, 401278DM, 401519SA, 401968HL, 400829MR, 401563TK, 401419SW, 401771OS, 400123WN, 401506LK, 401346FJ, 400686BM, 400171BJ, 401262RR, 401067BD, 401981GF, 400278PD, 401711WS, 402074RR, 401587RC, 401702GB, 401200BD, 400999HR, 400450FG, 400695PH, 400518MS, 400430KV, 401677MM, 401616WP, 400201PK, 401391PJ, 401898DS, 400770MA, 400158FB, 401365DJ, 400156WT, 401844ZD, 400376SJ, 401693RC, 401054VM, 400501SJ, 401786WD, 401661HD, 401438HT, 401149VA, 400312CR, 401567BD, 401143LK, 400811SK, 402073LQ, 401372RR, 401829FJ, 401354KM, 401735LE, 402042BJ, 401628GC, 401932GN, 400164SS, 400243CK, 401993HM, 400704LC
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1805e212
Frequency
Sample Size873
Observed Gain0
Observed Loss116
Observed Complex0
Frequencyn/a


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