A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv17n27



Internal ID20132275
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:54112728..54125649hg38UCSC Ensembl
chr1:54578401..54591322hg19UCSC Ensembl
chr1:54350989..54363910hg18UCSC Ensembl
chr1:54290422..54303343hg17UCSC Ensembl
Cytoband1p32.3
Allele length
AssemblyAllele length
hg3812922
hg1912922
hg1812922
hg1712922
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv461528, nsv461517
Samples1780854105_A, 1780854558_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv17n27
Frequency
Sample Size1557
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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