A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1751e212



Internal ID20150207
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:31380245..31488296hg38UCSC Ensembl
chr6:31348022..31456073hg19UCSC Ensembl
Cytoband6p21.33
Allele length
AssemblyAllele length
hg38108052
hg19108052
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3576137, esv3576140
Samples401845MJ, 401808PS
Known GenesHCG26, HCP5, MICA
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1751e212
Frequency
Sample Size873
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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