Variant Details

Variant: dgv174e212

Internal ID

22783101

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr10:10898199..10906511	hg38	UCSC Ensembl
	chr10:10940162..10948474	hg19	UCSC Ensembl

Cytoband

10p14

Allele length

Assembly	Allele length
hg38	8313
hg19	8313

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

esv3578625, esv3578620, esv3578623, esv3578624, esv3578621

Samples

401191MI, 400987FB, 400439IM, 401005BL, 400336BG, 401592NR, 401235IA, 400068PW, 401427CB, 401457WK, 400553PP, 401096SL, 400425SL, 400245SJ, 400241CP, 402019MC, 402064DC, 400061DE, 400348DK, 401766MR, 401831TW, 401038LN, 402061PI, 400333CC, 400341GL, 400729HC, 401192MJ, 400442FE, 401050GS, 401397WN, 401251WN, 401091HS, 400702PA, 401348RB, 401968HL, 400686BM, 402001SR, 400603CJ, 401369GR, 400601WC, 401012TP, 400586RD, 401797LS, 400785AK, 401066MM, 400091BS, 400923OA

Known Genes

Method

SNP array

Analysis

We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.

Platform

Affymetrix CytoScan HD 2.7M array

Comments

Reference

Uddin_et_al_2014

Pubmed ID

25503493

Accession Number(s)

dgv174e212

Frequency

Sample Size	873
Observed Gain	0
Observed Loss	47
Observed Complex	0
Frequency	n/a