Variant DetailsVariant: dgv1729e212Internal ID | 20150185 | Landmark | | Location Information | | Cytoband | 6p22.1 | Allele length | Assembly | Allele length | hg38 | 60637 | hg19 | 60637 |
| Variant Type | CNV gain | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3576134, esv3576131, esv3576126, esv3576123 | Samples | 401400NP, 400553PP, 400606HW, 401735LE | Known Genes | HCG4B, HLA-H | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv1729e212
| Frequency | Sample Size | 873 | Observed Gain | 4 | Observed Loss | 0 | Observed Complex | 0 | Frequency | n/a |
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