Variant DetailsVariant: dgv1726e212 Internal ID | 20150182 | Landmark | | Location Information | | Cytoband | 6p22.1 | Allele length | Assembly | Allele length | hg38 | 45522 | hg19 | 45522 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3570844, esv3570862, esv3570848, esv3570845, esv3570857, esv3570867 | Samples | 401196CR, 400268SY, 40031BA, 401962BK, 400906BR, 400995MS, 400655WB, 401384BP, 400641WJ, 400225CJ, 401582GG, 402016HZ, 400743LS, 402064DC, 400203NA, 400073HT, 401855RE, 401791FG, 401192MJ, 401331LJ, 400738WM, 401274PA, 400791GC, 401563TK, 401930GD, 400124FR, 401262RR, 401889FR, 400524NJ, 401039PA, 400818BL, 400654YW, 401535RJ, 400722OM, 400712GC, 400072GR, 401372RR, 401040KM, 400833BB, 400291VJ, 400494ML, 401180GR | Known Genes | HLA-H | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv1726e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 42 | Observed Complex | 0 | Frequency | n/a |
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