A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv171e212



Internal ID22783098
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:4605491..4610694hg38UCSC Ensembl
chr10:4647683..4652886hg19UCSC Ensembl
Cytoband10p15.1
Allele length
AssemblyAllele length
hg385204
hg195204
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3578595, esv3578593
Samples401212HJ, 400821FE, 400132HN, 401355CD, 400620MT, 400528LR, 401924ST, 400631SJ, 401908YM, 401540NA, 401652HL, 400758KP, 401444LD, 401543DC, 401882CR, 400300SD
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv171e212
Frequency
Sample Size873
Observed Gain0
Observed Loss16
Observed Complex0
Frequencyn/a


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