Variant DetailsVariant: dgv1693e212 | Internal ID | 22784620 | | Landmark | | | Location Information | | | Cytoband | 6p25.3 | | Allele length | | Assembly | Allele length | | hg38 | 49602 | | hg19 | 49602 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | esv3570669, esv3570700, esv3570636, esv3570641, esv3570686, esv3570680, esv3570646, esv3570637, esv3570663, esv3570661, esv3570699, esv3570655, esv3570690, esv3570649, esv3570640, esv3570645, esv3570695, esv3570683, esv3570666, esv3570697, esv3570662, esv3570651, esv3570665, esv3570668, esv3570659, esv3570660, esv3570691, esv3570706, esv3570647, esv3570685, esv3570696, esv3570648, esv3570644, esv3570708, esv3570658, esv3570667, esv3570670, esv3570672, esv3570710, esv3570692, esv3570639, esv3570638, esv3570679, esv3570671, esv3570693, esv3570684, esv3570707, esv3570654 | | Samples | 401362ME, 401474CE, 401749DJ, 400308SP, 400424LN, 401212HJ, 400534ME, 400619MP, 401489CB, 401400NP, 400455SJ, 401819BS, 401285HN, 400737GC, 401077VC, 400889CM, 400876OG, 40031BA, 400313DF, 400101EH, 401673DM, 401380OL, 400140WM, 401415CB, 400574MA, 401742KB, 401518VK, 401321CE, 401036WS, 401079HJ, 401783BD, 401927SK, 401442WR, 400199SA, 401674DD, 401602PR, 401536BD, 400620MT, 401308LD, 401136LB, 400528LR, 402016HZ, 401975VD, 401924ST, 400051MR, 401687LR, 400343BD, 401935TM, 401908YM, 400600DP, 401214BJ, 400583HS, 400460DM, 401184MM, 400033KC, 401252AE, 400356MC, 401155ML, 401838EN, 401550SP, 401104DM, 400609FJ, 401495NR, 401994BD, 401818PC, 401532LJ, 402056KD, 401609MB, 401029SD, 400270BD, 400109LJ, 400442FE, 400929MM, 401764JJ, 400041LJ, 401979TB, 400383HL, 400007RG, 400974PS, 400738WM, 400236DB, 401591BE, 402033WD, 401540NA, 400702PA, 401863BD, 401950MD, 400960TN, 400496BL, 400122PL, 401348RB, 400914ER, 401318AV, 401586RS, 401864CV, 401618HR, 401879HJ, 401859GS, 400123WN, 401762SD, 401630MK, 401506LK, 400724CD, 401346FJ, 400171BJ, 400006DK, 402054BD, 402001SR, 400888MS, 401812HG, 401443JK, 400362TV, 400319HT, 400258BC, 400135DR, 401700BN, 401359HF, 400795CL, 401361GG, 400542EG, 400722OM, 401608GE, 400103BN, 400845ML, 400712GC, 401295HB, 400376SJ, 401881TJ, 401847RK, 400295PS, 401693RC, 401611CD, 400759FV, 400235MP, 400128MJ, 400769SL, 400586RD, 401166WJ, 402008MC, 401143LK, 401215MJ, 400792RE, 400271SR, 401543DC, 400106PC, 401912HD, 400508RD, 400261RN, 400178RH, 400150SS, 400079AP, 400209BS, 401612HB, 400540BM, 400021ME, 401254AE, 401517PR, 400138LA, 401490TL, 401111LH, 400704LC, 400645KM, 400982BS | | Known Genes | DUSP22 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | dgv1693e212
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 163 | | Observed Complex | 0 | | Frequency | n/a |
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