Variant DetailsVariant: dgv167e212 | Internal ID | 22783094 | | Landmark | | | Location Information | | | Cytoband | 1q44 | | Allele length | | Assembly | Allele length | | hg38 | 42094 | | hg19 | 42094 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | esv3578555, esv3578554, esv3578562, esv3578557, esv3578558, esv3578567, esv3578566, esv3578548, esv3578552, esv3578556, esv3578568 | | Samples | 401021SC, 400911GA, 401749DJ, 401706BJ, 401033DJ, 400308SP, 400649PS, 401221LD, 400439IM, 401852SK, 400534ME, 400739SS, 401052BM, 401819BS, 401275SJ, 400917CG, 401769CR, 401956DQ, 40031BA, 400101EH, 400622SJ, 400683EC, 400429YF, 400230TB, 402067KS, 400272AE, 401841OB, 400655WB, 401457WK, 401151RJ, 400553PP, 401949MN, 401093VL, 400897MD, 401468RL, 401434VN, 400855BD, 401556KR, 400797ST, 400643LD, 400509CJ, 401536BD, 401355CD, 400493KH, 401500OM, 400486LS, 400241CP, 401551MB, 400528LR, 401990PR, 400893ZE, 401975VD, 400606HW, 400743LS, 400882DD, 400337HG, 400203NA, 400134WK, 402065BG, 400688FL, 400148MS, 400526DR, 400022WA, 400320RN, 400749VW, 401165SB, 400121PL, 401155ML, 401104DM, 401596PJ, 400385LJ, 400374LB, 400353ML, 401818PC, 400344DR, 400717BD, 400653GP, 401773AM, 401609MB, 400060MC, 400218WK, 401764JJ, 401977ES, 401732HW, 401979TB, 400302HW, 401655DC, 400236DB, 401251WN, 401870FB, 401084TD, 400791GC, 400040CN, 400955BE, 400838AM, 400207HN, 401950MD, 401125LM, 401278DM, 400967PK, 400375KA, 401423BA, 401348RB, 400381CA, 400829MR, 401864CV, 401879HJ, 401563TK, 401326LI, 400123WN, 401630MK, 400124FR, 400800MW, 401504RJ, 400361HC, 400171BJ, 401952UH, 402022SM, 401075MN, 400888MS, 401414CR, 400639RP, 400248JO, 401039PA, 400362TV, 401011PJ, 401795SP, 400598DA, 400611GG, 400474GF, 401514BA, 400518MS, 400136DM, 400837HN, 401428LD, 400103BN, 400053LE, 401365DJ, 401295HB, 400246MG, 401277RA, 401010HT, 401894PD, 401314MK, 400586RD, 400312CR, 400072GR, 401861GG, 4000046CJ, 401166WJ, 401215MJ, 400792RE, 401543DC, 400849SH, 401829FJ, 401105WS, 401354KM, 401607LL, 401177SL, 400508RD, 401882CR, 401053MF, 400300SD, 401510DG, 400021ME, 400238BB, 401993HM, 400091BS, 400668TD, 401490TL, 401246HH | | Known Genes | OR2T10, OR2T11 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | dgv167e212
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 171 | | Observed Complex | 0 | | Frequency | n/a |
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