Variant DetailsVariant: dgv166e212 Internal ID | 20148622 | Landmark | | Location Information | | Cytoband | 1q44 | Allele length | Assembly | Allele length | hg38 | 140003 | hg19 | 140003 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3578565, esv3578551, esv3578564, esv3578563, esv3578561, esv3578553 | Samples | 400269DA, 401474CE, 400287BP, 401420PJ, 401986LC, 401673DM, 401487FW, 400906BR, 401966SR, 401918CA, 401820SD, 400641WJ, 400277LM, 400627CC, 401263HS, 401401BA, 401364NA, 400368SD, 400307HW, 400338SR, 401746WW, 401393JW, 400107MJ, 400282RA, 401397WN, 401714BM, 401357MH, 401119DK, 401930GD, 401087SF, 400603CJ, 400242TP, 401580CA, 401259LS, 400329HJ, 401315HK, 400376SJ, 400930MK, 400811SK, 401372RR, 401912HD, 401284NA, 401969DR | Known Genes | OR2T10, OR2T11, OR2T27, OR2T29, OR2T34, OR2T35 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv166e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 43 | Observed Complex | 0 | Frequency | n/a |
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