Variant DetailsVariant: dgv1653e212 Internal ID | 20150109 | Landmark | | Location Information | | Cytoband | 5q31.3 | Allele length | Assembly | Allele length | hg38 | 34992 | hg19 | 34992 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3570467, esv3570462, esv3570468, esv3570463 | Samples | 400439IM, 401079HJ, 400528LR, 402038MR, 400427SD, 401251WN, 400870KC, 401950MD, 400006DK, 401087SF, 400267GD, 401153HS, 401207DA | Known Genes | PCDHA1, PCDHA10, PCDHA11, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA7, PCDHA8, PCDHA9 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv1653e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 13 | Observed Complex | 0 | Frequency | n/a |
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