A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv156n27



Internal ID20132414
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:67997585..68032459hg38UCSC Ensembl
chr11:67765056..67799926hg19UCSC Ensembl
chr11:67521632..67556502hg18UCSC Ensembl
chr11:67521632..67556502hg17UCSC Ensembl
Cytoband11q13.2
Allele length
AssemblyAllele length
hg3834875
hg1934871
hg1834871
hg1734871
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv468614, nsv468613
SamplesHGDP00546, 1780862226_A
Known GenesALDH3B1, NDUFS8, UNC93B1
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv156n27
Frequency
Sample Size1557
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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