A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv145n27



Internal ID20132403
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:55592737..55703518hg38UCSC Ensembl
chr11:55360213..55470994hg19UCSC Ensembl
chr11:55116789..55227570hg18UCSC Ensembl
chr11:55116789..55227570hg17UCSC Ensembl
Cytoband11q11
Allele length
AssemblyAllele length
hg38110782
hg19110782
hg18110782
hg17110782
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv468498, nsv468118, nsv468115, nsv468373, nsv468022, nsv468542, nsv468424, nsv468387, nsv468418, nsv468195, nsv467911, nsv468515, nsv468075, nsv467964, nsv467945, nsv467973, nsv468009, nsv467982, nsv468420, nsv468491, nsv468258, nsv468209, nsv468522, nsv468154, nsv468033, nsv468514, nsv468310, nsv468411, nsv468426, nsv468476, nsv467981, nsv468296, nsv468311, nsv468053, nsv468367, nsv468335, nsv468228, nsv468520, nsv468545, nsv468432, nsv468385, nsv468089, nsv467934, nsv468423, nsv468377, nsv468145, nsv467930, nsv468384, nsv468067, nsv468546, nsv468318, nsv468235, nsv468351, nsv468452, nsv468013, nsv467957, nsv468333, nsv468130, nsv468256, nsv468245, nsv467921, nsv468359, nsv467992, nsv468217, nsv468190, nsv468054, nsv468178, nsv468438, nsv467954, nsv468278, nsv468003, nsv468370, nsv468484, nsv468330, nsv468219, nsv468440, nsv468403, nsv468313, nsv467959, nsv468196, nsv468340, nsv467904, nsv468430, nsv467975, nsv468151, nsv468404, nsv467942, nsv468489, nsv468277, nsv468490, nsv468285, nsv467980, nsv468295, nsv468163, nsv468031, nsv468058, nsv468134, nsv468401, nsv468398, nsv468133, nsv467999, nsv468087, nsv468106, nsv468350, nsv468363, nsv468549, nsv468405, nsv467946, nsv467952, nsv468319, nsv467922, nsv468189, nsv468104, nsv468464, nsv468299, nsv468090, nsv468026, nsv468211, nsv468416, nsv468111, nsv467998, nsv468275, nsv468473, nsv467965, nsv468265, nsv468203, nsv468242, nsv468525, nsv468039, nsv468453, nsv468095, nsv467958, nsv468233, nsv468232, nsv468532, nsv468392, nsv468243, nsv467974, nsv468422, nsv468526, nsv468536, nsv468204, nsv468132, nsv468158, nsv468317, nsv468287, nsv468068, nsv468148, nsv467941, nsv468523, nsv468390, nsv468109, nsv468201, nsv468465, nsv468025, nsv468386, nsv468314, nsv468170, nsv468040, nsv467989, nsv468468, nsv468257, nsv468208, nsv468357, nsv468537, nsv468187, nsv468263, nsv468002, nsv467953, nsv468375, nsv468012, nsv468048, nsv468355, nsv468122, nsv468142, nsv468449, nsv468286, nsv468240, nsv468084, nsv467933, nsv468516, nsv468508, nsv468364, nsv467903, nsv468534, nsv468182, nsv468042, nsv468036, nsv468326, nsv468166, nsv468344, nsv468474, nsv468059, nsv468139, nsv468043, nsv468244, nsv468069, nsv467926, nsv468221, nsv468224, nsv468156, nsv467979, nsv468220, nsv468415, nsv468010, nsv468007, nsv467906, nsv468455, nsv468123, nsv468348, nsv467937, nsv468141, nsv468086, nsv468425, nsv468451, nsv468470, nsv468460, nsv468024, nsv468381, nsv468071, nsv468236, nsv468085, nsv468136, nsv468032, nsv468446, nsv468372, nsv468369, nsv468177, nsv468200, nsv467985, nsv468202, nsv468113, nsv468066, nsv468429, nsv468056, nsv468436, nsv468097, nsv468146, nsv468266, nsv468361, nsv468547, nsv468487, nsv468076, nsv468021, nsv468020, nsv468222, nsv468323, nsv468093, nsv468510, nsv468292, nsv468251, nsv468253, nsv468354, nsv468129, nsv468063, nsv467932, nsv468524, nsv468530, nsv468188, nsv468495, nsv468168, nsv467924, nsv468004, nsv467993, nsv468206, nsv468120, nsv468353, nsv468185, nsv467910, nsv468267, nsv468408, nsv468272, nsv468231, nsv467907, nsv468081, nsv468341, nsv468475, nsv468255, nsv468419, nsv468500, nsv468131, nsv467955, nsv468215, nsv468358, nsv468259, nsv468497, nsv468186, nsv468103, nsv468179, nsv468234, nsv467990, nsv468028, nsv468329, nsv468519, nsv468485, nsv468479, nsv468389, nsv468463, nsv468496, nsv468135, nsv468293, nsv468011, nsv468521, nsv468492, nsv468107, nsv468320, nsv468091, nsv467915, nsv468140, nsv468504, nsv468088, nsv467977, nsv468030, nsv468332, nsv468325, nsv468412, nsv468050, nsv468192, nsv468167, nsv468427, nsv468246, nsv468181, nsv468444, nsv468433, nsv468315, nsv468225, nsv468454, nsv468279, nsv468529, nsv468448, nsv468434, nsv468291, nsv468301, nsv468399, nsv468264, nsv468073, nsv468303, nsv468052, nsv468270, nsv468304, nsv467943, nsv468347, nsv468391, nsv468477, nsv468280, nsv467988, nsv468114, nsv468409, nsv468457, nsv468402, nsv467987, nsv467923, nsv468128, nsv468383, nsv468162, nsv467968, nsv467912, nsv468531, nsv468548, nsv468458, nsv468543, nsv468207, nsv468080, nsv467925, nsv468513, nsv468074, nsv468015, nsv468481, nsv468237, nsv467971, nsv468410, nsv468273, nsv468553, nsv468078, nsv467939, nsv468252, nsv468125, nsv468322, nsv468098, nsv467936, nsv468342, nsv468336, nsv468126, nsv467928, nsv467913, nsv468400, nsv468035, nsv467951, nsv468300, nsv468321, nsv468443, nsv468380, nsv468501, nsv467976, nsv468421, nsv468019, nsv468345, nsv468184, nsv468512, nsv468339, nsv468328, nsv468309, nsv468006, nsv468110, nsv468480, nsv467935, nsv468029, nsv467899, nsv468112, nsv468157, nsv467996, nsv468535, nsv468469, nsv467948, nsv468269, nsv468378, nsv468150, nsv468554, nsv468268, nsv467917, nsv468362, nsv468302, nsv468223, nsv467944, nsv468230, nsv468250, nsv468017, nsv468437, nsv468037, nsv468092, nsv468147, nsv468191, nsv468346, nsv468198, nsv468374, nsv468486, nsv468229, nsv468511, nsv468174, nsv468000, nsv468175, nsv467902, nsv468247, nsv468538, nsv468180, nsv468467, nsv468045, nsv468297, nsv467918, nsv468435, nsv468441, nsv468397, nsv468100, nsv468308, nsv468540, nsv467969, nsv468507, nsv468261, nsv468008, nsv467962, nsv468079, nsv468165, nsv468099, nsv468199, nsv468034, nsv468077, nsv468518, nsv468159, nsv468212, nsv467960, nsv467909, nsv468356, nsv468155, nsv468018, nsv468307, nsv468057, nsv468173, nsv468023, nsv468306, nsv468459, nsv468396, nsv468281, nsv468193, nsv468108, nsv468218, nsv467966, nsv468248, nsv468121, nsv467931, nsv468044, nsv468334, nsv468047, nsv468365, nsv468471, nsv468502, nsv468051, nsv468014, nsv468101, nsv468124, nsv468478, nsv468041, nsv467991, nsv468290, nsv468527, nsv468254, nsv468324, nsv468096, nsv467967, nsv468117, nsv467920, nsv467947, nsv468161, nsv468488, nsv468462, nsv468055, nsv468533, nsv468551, nsv468276, nsv468414, nsv468509, nsv468001, nsv467997, nsv468466, nsv467963, nsv467919, nsv468503, nsv468482, nsv468046, nsv467929, nsv468493, nsv468284, nsv468431, nsv467995, nsv468169, nsv468176, nsv468541, nsv468082, nsv468388, nsv468331, nsv468164, nsv468312, nsv468442, nsv468144, nsv467914, nsv468289, nsv468064, nsv467908, nsv468366
SamplesHGDP00802, NINDS_230, HGDP00336, HGDP01041, HGDP00995, HGDP01037, HGDP00102, NINDS_203, HGDP00685, HGDP00356, HGDP00999, HGDP01350, 1780862180_A, HGDP00576, HGDP00121, HGDP00775, HGDP00438, HGDP00749, HGDP01179, HGDP01388, HGDP00859, HGDP00154, HGDP01057, HGDP01012, NINDS_149, HGDP01180, NINDS_193, 1780862304_A, HGDP00423, HGDP00756, HGDP01221, HGDP01234, HGDP01288, HGDP01263, NINDS_244, 1780862394_A, HGDP01259, 1780862334_A, NINDS_74, HGDP00262, HGDP00428, NINDS_105, NINDS_196, 1780862393_A, HGDP00239, HGDP01245, HGDP01099, HGDP00118, 1780854158_A, HGDP00623, HGDP00814, NINDS_80, 1780862401_A, HGDP00600, 1798860336_A, HGDP00064, NINDS_253, HGDP00778, HGDP00035, NINDS_9, HGDP00279, HGDP00153, HGDP00930, HGDP01244, 1780854016_A, 1780854462_A, HGDP01351, NINDS_89, HGDP00124, 1780854537_A, 1780862100_A, HGDP00082, HGDP00161, HGDP01262, 1780862448_A, 1780862466_A, HGDP00952, HGDP01208, 1780854392_A, 1780862294_A, HGDP01402, HGDP00191, HGDP00857, NINDS_206, HGDP00787, NINDS_155, HGDP00785, HGDP00818, NINDS_160, HGDP00876, HGDP00158, HGDP00637, HGDP00672, HGDP01050, HGDP01385, HGDP00351, HGDP00526, HGDP01056, NINDS_97, NINDS_76, HGDP01322, NINDS_124, HGDP00013, HGDP00019, HGDP01226, HGDP01312, 1780854216_A, NINDS_101, HGDP01261, 1780862252_A, HGDP01201, NINDS_221, HGDP00185, HGDP00898, HGDP01258, HGDP00846, 1780854341_A, 1780862530_A, HGDP00290, HGDP01203, HGDP01238, HGDP00761, HGDP01184, NINDS_102, HGDP00037, NINDS_257, 1780862381_A, 1780862596_A, HGDP01282, HGDP00696, HGDP01097, 1782681102_A, HGDP00054, HGDP00620, HGDP01174, HGDP00226, HGDP00663, HGDP00676, HGDP00131, HGDP00564, HGDP00928, HGDP00819, HGDP00838, 1780846005_A, 1780854318_A, 1780862540_A, 1780854219_A, HGDP00594, HGDP00622, HGDP00972, HGDP01331, HGDP01374, NINDS_246, NINDS_109, 1780862001_A, 1780854592_A, HGDP00889, HGDP00908, HGDP01271, 1780854496_A, 1780862379_A, HGDP01359, NINDS_241, 1782681144_A, HGDP00837, 1780862437_A, 1780862592_A, HGDP00627, HGDP00861, HGDP00741, HGDP01191, HGDP00598, HGDP01164, NINDS_119, HGDP00959, HGDP00537, HGDP01269, HGDP00864, 1780854198_A, HGDP00877, HGDP00583, HGDP00772, HGDP01096, HGDP01213, HGDP01362, 1780854446_A, 1780862109_A, HGDP00697, NINDS_211, HGDP00143, NINDS_272, 1780862014_A, HGDP01209, HGDP00717, HGDP00656, HGDP00710, HGDP00797, HGDP00554, 1798860166_A, HGDP01370, NINDS_39, HGDP01047, HGDP00445, HGDP00616, 1780862559_A, HGDP01377, HGDP00543, NINDS_131, HGDP00522, HGDP01195, 1780854574_A, HGDP00244, HGDP01147, HGDP00558, HGDP00958, HGDP01198, HGDP00625, 1787431197_A, NINDS_163, NINDS_231, 1780862388_A, HGDP00309, HGDP01305, HGDP01307, HGDP00956, 1780862435_A, HGDP00935, HGDP01063, 1780862403_A, HGDP00171, HGDP00662, HGDP00762, NINDS_115, 1780854130_A, HGDP01073, HGDP00604, HGDP01177, HGDP00187, HGDP01384, HGDP00711, 1780862443_A, HGDP00572, HGDP01217, 1780854511_A, 1780862075_A, HGDP00613, HGDP01072, 1780854445_A, HGDP00112, HGDP01274, HGDP00610, HGDP00856, HGDP01327, NINDS_17, HGDP00058, HGDP00286, 1780862162_A, 1782681294_A, HGDP00790, HGDP00725, HGDP00541, 1780862021_A, NINDS_259, NINDS_81, HGDP00716, HGDP00060, HGDP00157, HGDP00525, NINDS_129, NINDS_179, 1780854558_A, NINDS_100, 1780862080_A, HGDP00047, 1782681024_A, HGDP00849, HGDP00183, HGDP00845, HGDP01347, NINDS_71, HGDP00806, HGDP00884, 1780862094_A, HGDP00548, HGDP00655, HGDP00872, HGDP00654, HGDP00722, 1782681317_A, HGDP01345, 1780854176_A, HGDP00574, HGDP00136, HGDP00683, HGDP00766, HGDP01366, 1780862161_A, HGDP00288, HGDP00563, HGDP00745, HGDP00891, HGDP00927, HGDP00961, HGDP01321, HGDP01348, 1780854436_A, HGDP00150, HGDP01100, HGDP00110, 1780854334_A, HGDP01302, 1780862584_A, HGDP00631, HGDP00001, HGDP01376, NINDS_4, 1780854568_A, HGDP00863, HGDP00886, HGDP01173, HGDP01289, HGDP01308, HGDP01077, 1780862551_A, HGDP00855, HGDP01101, 1780854210_A, NINDS_87, 1782681263_A, HGDP00909, HGDP00298, HGDP00402, HGDP00779, HGDP00807, HGDP01078, HGDP01363, NINDS_114, HGDP00643, HGDP01069, HGDP01298, 1780862261_A, HGDP00011, HGDP00820, HGDP00780, 1798860049_A, HGDP00088, HGDP00702, HGDP00080, HGDP01318, HGDP00732, HGDP01067, NINDS_116, NINDS_162, 1780862299_A, 1780862599_A, 1798860592_A, 1780862160_A, HGDP00624, HGDP00587, 1780854302_A, HGDP01076, HGDP00066, HGDP00359, HGDP01358, HGDP00615, NINDS_3, HGDP00155, HGDP01043, HGDP01294, HGDP00023, HGDP00210, HGDP00591, HGDP01205, 1780862574_A, HGDP00969, HGDP01387, HGDP00129, HGDP00146, HGDP00781, HGDP00860, HGDP00998, HGDP01267, 1780862078_A, 1780862043_A, HGDP00160, HGDP01044, HGDP01058, NINDS_22, 1787431166_A, 1798860072_A, HGDP00828, HGDP01253, HGDP00852, HGDP00568, 1780862101_A, HGDP00315, HGDP01328, HGDP01053, 1780862274_A, HGDP00755, HGDP00130, HGDP01352, HGDP00057, NINDS_222, 1780862554_A, 1780854017_A, 1780862020_A, 1780854533_A, HGDP01247, 1780854485_A, HGDP01027, HGDP00971, NINDS_99, 1780854100_A, 1780862392_A, HGDP00629, 1780862300_A, NINDS_232, 1780862424_A, HGDP01266, HGDP00237, HGDP00141, 1780862576_A, HGDP00647, HGDP00090, 1780862125_A, HGDP01059, HGDP01010, HGDP00135, NINDS_42, 1782681099_A, HGDP00491, HGDP00764, HGDP00843, HGDP00964, HGDP00086, HGDP00642, HGDP00041, HGDP00197, HGDP00747, 1780854444_A, HGDP00052, HGDP00938, HGDP00277, 1780862415_A, 1780854463_A, NINDS_31, HGDP00319, HGDP01400, 1780854439_A, 1780862404_A, 1782681080_A, HGDP00699, HGDP00015, HGDP00821, HGDP01275, HGDP00664, HGDP00556, 1780854382_A, 1780862432_A, HGDP00333, 1780854567_A, 1780862563_A, 1782681378_A, HGDP01194, 1782681109_A, HGDP01317, 1782681287_A, HGDP00529, 1798860251_A, NINDS_45, HGDP00869, HGDP01338, HGDP00258, HGDP01306, NINDS_171, HGDP01268, NINDS_29, HGDP00134, HGDP00890, NINDS_207, 1782681110_A, HGDP00813, HGDP00882, 1780862301_A, 1780854336_A, HGDP00105, HGDP00388, HGDP00760, HGDP00900, 1780862084_A, 1782681495_A, HGDP00674, HGDP01204, 1780862539_A, HGDP00724, HGDP01309, HGDP01071, 1780862156_A, HGDP00189, HGDP00479, 1780854484_A, HGDP00973, 1782681210_A, HGDP01319, HGDP00720, HGDP00033, HGDP00544, HGDP00679, HGDP00694, HGDP00758, HGDP00140, HGDP01200, 1798860047_A, 1780862461_A, HGDP00730, 1780862565_A, HGDP01287, NINDS_103, HGDP00017, HGDP00567, HGDP01228, NINDS_192, 1780862597_A, HGDP00579, 1780862419_A, 1782681116_A, 1782681219_A, HGDP00195, HGDP00748, 1780862229_A, HGDP00551, 1780862041_A, HGDP00120, 1798860306_A, HGDP00621, NINDS_65, HGDP01231, HGDP00552, HGDP01320, HGDP00133, HGDP00515, HGDP00865, HGDP00049, HGDP00553, HGDP00862, 1798860552_A, NINDS_134
Known GenesOR4C11, OR4C6, OR4P4, OR4S2
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv145n27
Frequency
Sample Size1557
Observed Gain0
Observed Loss548
Observed Complex0
Frequencyn/a


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