Variant DetailsVariant: dgv1438e212![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg38/?name=chr3:189642952..189654175;width=800;overview=1) Internal ID | 20149894 | Landmark | | Location Information | | Cytoband | 3q28 | Allele length | Assembly | Allele length | hg38 | 11224 | hg19 | 11224 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3569181, esv3569178, esv3569182, esv3569184 | Samples | 400920MK, 401285HN, 401956DQ, 401302LJ, 400553PP, 400325BE, 400425SL, 400528LR, 401924ST, 401780BB, 401873BK, 400411TG, 401691HA, 401432SB, 401423BA, 401419SW, 401443JK, 401087SF, 401414CR, 400520FM, 401361GG, 401295HB, 400235MP, 400323AA, 401912HD | Known Genes | TP63 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv1438e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 25 | Observed Complex | 0 | Frequency | n/a |
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