A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1432e212



Internal ID20149888
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:178821698..178836579hg38UCSC Ensembl
chr3:178539486..178554367hg19UCSC Ensembl
Cytoband3q26.32
Allele length
AssemblyAllele length
hg3814882
hg1914882
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3569137, esv3569138
Samples400312CR, 401674DD, 401763SG, 401112LG, 400411TG, 400618GC, 400108BJ, 401623SN, 401415CB, 400124FR, 401302LJ
Known GenesKCNMB2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1432e212
Frequency
Sample Size873
Observed Gain0
Observed Loss11
Observed Complex0
Frequencyn/a


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