Variant Details

Variant: dgv139e201

Internal ID

20125026

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chr11:58845738..59113363	hg38	UCSC Ensembl
	chr11:58613211..58880836	hg19	UCSC Ensembl

Cytoband

11q12.1

Allele length

Assembly	Allele length
hg38	267626
hg19	267626

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

esv2744557, esv2744559

Samples

SSM010, SSM065, SSM022, SSM007, SSM027, SSM092, SSM013, SSM053, SSM082, SSM086, SSM006, SSM036, SSM055, SSM091, SSM033, SSM084, SSM061, SSM099, SSM042, SSM040, SSM078, SSM043, SSM088, SSM089, SSM090, SSM064, SSM031, SSM035, SSM025, SSM072, SSM020, SSM071, SSM016, SSM057, SSM001, SSM032, SSM039, SSM024, SSM045, SSM067, SSM094, SSM083, SSM050, SSM097, SSM041, SSM062, SSM005, SSM012, SSM100, SSM056, SSM085, SSM017, SSM009, SSM011, SSM028, SSM029, SSM003, SSM095, SSM047, SSM073, SSM069, SSM021, SSM002, SSM037, SSM063, SSM087, SSM038, SSM046, SSM019, SSM096, SSM023, SSM052, SSM068, SSM044, SSM074, SSM004, SSM015, SSM026, SSM014, SSM049, SSM008, SSM098, SSM018, SSM076, SSM058, SSM059, SSM081, SSM070, SSM080

Known Genes

FAM111B, GLYATL1, LOC283194

Method

Sequencing

Analysis

Breakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads

Platform

Illumina HiSeq 2000

Comments

Reference

Wong_et_al_2012b

Pubmed ID

23290073

Accession Number(s)

dgv139e201

Frequency

Sample Size	96
Observed Gain	0
Observed Loss	89
Observed Complex	0
Frequency	n/a