Variant DetailsVariant: dgv1374e212 Internal ID | 20149830 | Landmark | | Location Information | | Cytoband | 3p21.31 | Allele length | Assembly | Allele length | hg38 | 14873 | hg19 | 14873 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3568735, esv3568734 | Samples | 401806DL, 401465TB, 401212HJ, 401986LC, 401380OL, 400683EC, 401698SB, 401674DD, 400558BL, 400523GB, 401258PC, 400827MM, 402062KR, 401842BJ, 401263HS, 400882DD, 400600DP, 401538NS, 401252AE, 400333CC, 401331LJ, 401714BM, 401939GD, 401526WB, 401586RS, 401825TH, 401443JK, 400362TV, 401307VR, 401259LS, 401514BA, 400430KV, 401391PJ, 400881GS, 401958MF, 401135CS, 400079AP, 400209BS, 400164SS, 401510DG, 400942HR, 400923OA, 401490TL, 400982BS | Known Genes | SCAP | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv1374e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 44 | Observed Complex | 0 | Frequency | n/a |
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