A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1365e212



Internal ID22784292
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:28331663..28360829hg38UCSC Ensembl
chr3:28373154..28402320hg19UCSC Ensembl
Cytoband3p24.1
Allele length
AssemblyAllele length
hg3829167
hg1929167
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3568669, esv3568666, esv3568667
Samples401474CE, 401368WR, 402029KJ, 401029SD, 400929MM, 400070PC, 400758KP, 401513KC, 401504RJ, 400458LS, 401295HB, 401215MJ, 401066MM, 401207DA
Known GenesAZI2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1365e212
Frequency
Sample Size873
Observed Gain0
Observed Loss14
Observed Complex0
Frequencyn/a


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