Variant DetailsVariant: dgv1350e212 Internal ID | 20149806 | Landmark | | Location Information | | Cytoband | 3p26.3 | Allele length | Assembly | Allele length | hg38 | 1272 | hg19 | 1272 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3568555, esv3568557, esv3568554, esv3568556 | Samples | 401636WR, 400739SS, 401640WJ, 400821FE, 401275SJ, 400132HN, 400737GC, 401487FW, 401117NA, 401966SR, 400141CC, 400949AM, 401427CB, 401721CP, 400077EB, 400340CD, 401136LB, 401634CH, 400893ZE, 402028BD, 400227MM, 401908YM, 400148MS, 401566DD, 400353ML, 400763BT, 400615RI, 400825TW, 400236DB, 401540NA, 401913GT, 401950MD, 400093BL, 401864CV, 401563TK, 401326LI, 401813DN, 400800MW, 401017SC, 400006DK, 400888MS, 400639RP, 401889FR, 400177CG, 400136DM, 400728PB, 401496SL, 400722OM, 400053LE, 401365DJ, 400156WT, 400246MG, 400267GD, 400769SL, 400106PC, 401912HD, 401105WS, 400130HA, 401836SI, 401053MF, 400782IE, 400704LC, 400645KM, 401180GR | Known Genes | CNTN4 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv1350e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 64 | Observed Complex | 0 | Frequency | n/a |
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