A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1312e212



Internal ID20149768
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr22:27775349..27777167hg38UCSC Ensembl
chr22:28171337..28173155hg19UCSC Ensembl
Cytoband22q12.1
Allele length
AssemblyAllele length
hg381819
hg191819
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3568345, esv3568346
Samples400852WJ, 401022ML, 400486LS, 401869BG, 401606CG
Known GenesMN1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1312e212
Frequency
Sample Size873
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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