A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1306e212



Internal ID19008514
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr22:25330695..25526367hg38UCSC Ensembl
chr22:25726662..25922334hg19UCSC Ensembl
Cytoband22q11.23
Allele length
AssemblyAllele length
hg38195673
hg19195673
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3568319, esv3568321
Samples401602PR, 401913GT
Known GenesCRYBB2P1, LRP5L, MIR6817
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1306e212
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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