A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1260e212



Internal ID20149716
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr21:14275087..14287941hg38UCSC Ensembl
chr21:15647408..15660262hg19UCSC Ensembl
Cytoband21q11.2
Allele length
AssemblyAllele length
hg3812855
hg1912855
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3568107, esv3568106
Samples401505WI, 401105WS, 401281BP, 401594MP, 400523GB, 400248JO, 400729HC, 400235MP, 400660GK, 401268PS
Known GenesABCC13
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1260e212
Frequency
Sample Size873
Observed Gain0
Observed Loss10
Observed Complex0
Frequencyn/a


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