A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1242e212



Internal ID20149698
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr20:38769015..38787742hg38UCSC Ensembl
chr20:37397658..37416385hg19UCSC Ensembl
Cytoband20q11.23
Allele length
AssemblyAllele length
hg3818728
hg1918728
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3567962, esv3567960
Samples400474GF, 401619BT, 401966SR, 400494ML, 400863SS, 401459HF, 400377WJ, 400103BN, 401550SP, 400114GR, 401385BB, 401368WR, 401700BN, 401940SJ, 401254AE, 401497PR, 400866RR, 401498HH, 400639RP, 401702GB, 401198TI
Known GenesACTR5
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1242e212
Frequency
Sample Size873
Observed Gain0
Observed Loss21
Observed Complex0
Frequencyn/a


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