A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1202e212



Internal ID22784129
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:206663271..206673216hg38UCSC Ensembl
chr2:207527995..207537940hg19UCSC Ensembl
Cytoband2q33.3
Allele length
AssemblyAllele length
hg389946
hg199946
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3584286, esv3584285
Samples401366WD, 401110GJ, 401949MN, 400106PC
Known GenesDYTN
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1202e212
Frequency
Sample Size873
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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