A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv1188e212



Internal ID22784115
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:176815235..176824701hg38UCSC Ensembl
chr2:177679963..177689429hg19UCSC Ensembl
Cytoband2q31.1
Allele length
AssemblyAllele length
hg389467
hg199467
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3584184, esv3584185
Samples401221LD, 400970VE, 401857VG, 400581VJ, 401207DA
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv1188e212
Frequency
Sample Size873
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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