A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv115n27



Internal ID22766844
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:81678671..81759951hg38UCSC Ensembl
chr10:83438427..83519707hg19UCSC Ensembl
chr10:83428407..83509687hg18UCSC Ensembl
chr10:83428407..83509687hg17UCSC Ensembl
Cytoband10q23.1
Allele length
AssemblyAllele length
hg3881281
hg1981281
hg1881281
hg1781281
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv467400, nsv467399
Samples1780862042_A, 1782681093_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv115n27
Frequency
Sample Size1557
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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