A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv113n27



Internal ID22766842
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:78507242..78554543hg38UCSC Ensembl
chr10:80266999..80314300hg19UCSC Ensembl
chr10:79937005..79984306hg18UCSC Ensembl
chr10:79937005..79984306hg17UCSC Ensembl
Cytoband10q22.3
Allele length
AssemblyAllele length
hg3847302
hg1947302
hg1847302
hg1747302
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv467385, nsv467386
SamplesHGDP00788, HGDP01075
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv113n27
Frequency
Sample Size1557
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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