A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv111n27



Internal ID22766840
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:69523734..69537212hg38UCSC Ensembl
chr10:71283490..71296968hg19UCSC Ensembl
chr10:70953496..70966974hg18UCSC Ensembl
chr10:70953496..70966974hg17UCSC Ensembl
Cytoband10q21.3
Allele length
AssemblyAllele length
hg3813479
hg1913479
hg1813479
hg1713479
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv467360, nsv467363, nsv467357, nsv467358, nsv467359, nsv467362
SamplesHGDP00717, HGDP00750, HGDP01312, HGDP00956, HGDP01333, HGDP01331
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv111n27
Frequency
Sample Size1557
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer