Variant DetailsVariant: dgv1094e212 Internal ID | 20149550 | Landmark | | Location Information | | Cytoband | 19q13.43 | Allele length | Assembly | Allele length | hg38 | 1270 | hg19 | 1270 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3583601, esv3583602, esv3583603, esv3583604 | Samples | 401706BJ, 400364SS, 400970VE, 401330RR, 400995MS, 401151RJ, 401384BP, 400528LR, 400482MD, 400121PL, 401347DH, 401870FB, 401499JR, 401589HP, 401494PD, 400844GP, 400361HC, 400371GA, 400474GF, 400329HJ, 400601WC, 401365DJ, 401438HT | Known Genes | ZNF264 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv1094e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 23 | Observed Complex | 0 | Frequency | n/a |
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